Page 12 - Periodic ISSUE 8
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results, novel protease inhibitors were designed and
                                                                                                                                   synthesized by Lennart Brewitz; some of these  show
                                                                                                                                   encouraging protease inhibition activities.

                                                                                                                                   Along with in-house screening of drugs, this assay has
                                                                                                                                   also been used in collaboration with PostEra Inc. and
                                                                                                                                   a multidisciplinary cohort of scientists from academia
                                                                                                                                   and industry to screen compounds from the COVID
                                                                                                                                   Moonshot Project: a crowdsourced and collaborative
                                                                                                                                   initiative that aims to speed up discovery of the
                                                                                                                                   COVID-19 antiviral compound.                      Florian Modicom, Sourabh Mishra and Conor Dean – members of
                                                                                                                                                                                     the Fletcher group working on COVID-19 research – relax outside
                                                                                                                                   Drugs and treatments                              the lab.
                                                                                                                                   The Schofield group has also been part of a highly
                                                                                    Image: © Filip, Adobe Image Library.           collaborative investigation into repurposing the existing   administered intravenously and was previously tested
                                                                                                                                   respiratory drug almitrine to treat COVID-19 patients.   as a treatment for hepatitis C and the Ebola virus. This
                                                                                                                                   Many coronavirus patients die on ventilators because   new research will use rhodium-catalyzed reactions,
                                                                                                                                   their lungs cannot take in enough oxygen. Almitrine,   developed in the Fletcher lab, to make a variety of
                C
                                                                                                                                   previously used to treat chronic obstructive pulmonary
                                                                                                                                                                                     candidate molecules that look similar to Remdesivir.
                     oronavirus Research                                                                                           disease (COPD), is a respiratory stimulant that helps   These will then be assessed based on their biological
                                                                                                                                   increase uptake of oxygen into blood in the lungs.
                                                                                                                                                                                     activity, with the ultimate aim being effective inhibition
                                                                                                                                   A collaboration across departments of the university,   of COVID-19 viral replication.
             The Department of Chemistry has been playing its part in the fight against COVID-19.                                  led by Peter Robbins from the Department of       References: Goetzke, F. W. et al., Angew. Chem. Int. Ed. 58
            Thomas Player explains some of the most recent research.                                                               Physiology, Anatomy and Genetics, aims to determine   (2019) 12128–12132 (doi.org/10.1002/anie.201906478),
                                                                                                                                   if almitirine will have a similar effect in COVID-19   Schäfer, P. et al., Nat. Commun. 8 (2017) 15762 (doi.
                                                                                                                                                                                     org/10.1038/ncomms15762).
                                                                                                                                   patients and prevent them being put on ventilators. The
            Funding new research                              peptide substrates were                                              Schofield group, and in particular Tharindi Panduwawala   Analysis and screening
            Chris Schofield was part of the committee responsible  synthesized to monitor                                          and Alistair Farley, have developed routes to synthesise   Potential methods for inhibiting the virus responsible
            for distributing the University’s COVID-19 Research   the activity of M .                                              and analyse almitrine, and the drug will now be tested   for COVID-19 are being investigated using mass
                                                                            pro
            Response Fund, which has received very substantial   Tobias John, a DPhil                                              in clinical trials funded by LifeArc at three UK hospitals.   spectrometry in native conditions in a collaboration
            philanthropic donations during the crisis. It has funded   student in Schofield                                        Since almitrine is a relatively cheap drug it could be   between Carol Robinson, Chris Schofield, and
            projects related to COVID-19 across the University,   group, spent many                                                particularly useful where ventilators are not readily   colleagues in the Department of Biochemistry. They
            including four in the Department of Chemistry.                                                                         available, improving patients’ lung function before the
                                                              days synthesizing                                                    disease progresses too far.                       have been considering the effect of small molecules
            Inhibiting the virus                              and purifying natural                                                                                                  that can bind to the virus far from its active site.
            One project in the Schofield group saw DPhil student   peptide substrates of                                           “We hope that this massive and very productive set of   Drugs that bind non-covalently in this way can limit
            Tika Malla and postdoctoral researcher Tony Tumber   viral enzymes. This key                                           national and international collaborations on COVID-19   its activity, and may also be more stable and have less
            developing a mass spectrometry based assay to screen   work was carried out   Tika Malla, member of the Schofield      will be maintained over the longer term,” said Professor   toxic effects than other drugs that bind irreversibly.
            many different compounds and assess how they may   during the peak of the   group, next to a RapidFire mass            Schofield, “to address not only potential future   Using mass spectrometry they characterised a section
                                                                                                                                                                                                              Pro
            inhibit viral enzyme targets, as prepared by Martin   lockdown period this   spectrometry sampler and injecting        pandemics but also viral diseases in general, particularly   of the SARS-CoV-2 protein M  – the main protein
                                                                                     a sample from a 96-well plate. This
            Walsh and his team at the Diamond Light Source. The   spring, with many late   equipment was crucial for the screening   in middle and lower income countries where diseases   responsible for processing mature SARS-CoV-2 – and
            aim of this project is to identify existing drugs that may   nights but always with   assay developed by the Schofield group.  like dengue and Zika fever are major killers. There is   found that several small molecules can bind non-
            be effective against the virus, as well as developing new  stringent consideration                                     just a chance that these efforts will change the way   covalently to this protein and slow its activity. This
            treatments.                                       of health and safety and increased hygiene practices.                the world works for the better in terms of infectious   is a promising and straightforward route to test and
                                                              The work was fantastically well supported by the CRL                 diseases.”                                        optimise potential antiviral drugs.
            The assay was designed to monitor the inhibition of the   staff including stores members, Adam Hardy, and the
            main protease (M ). Unlike human proteins, the viral   wonderful cleaners.                                             Stephen Fletcher’s research group has received a   Biophysics of COVID “spike” protein
                           pro
            proteins are synthesised in long polypeptide chains. The                                                               grant from UK Research and Innovation in order to   The university’s COVID-19 response fund has also
            function of M  is to cleave these polypeptide chains   Unsure how the disease would progress, members of               develop COVID-19 specific viral RNA polymerase    awarded funding to Philipp Kukura’s research group
                        pro
            and release the proteins to carry out their downstream   the Schofield group were able to optimise a method for        inhibitors. This is a type of drug that prevents   in order to investigate the molecular biophysics of the
            roles either individually or by forming a complex with   comparing how effective many different compounds              replication of the virus’ genetic material. Their work   protein responsible for COVID-19. In particular, they
            other proteins. As the polypeptides are up to 20   are at impairing the coronavirus protein – a vital tool             is inspired by Remdesivir, an antiviral drug that is   will be using their state-of-the-art mass photometry
            kilodaltons long and synthetically less feasible, short   for assessing the efficacy of new drugs. Based on these



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            Periodic       The Magazine of the Department of Chemistry                                                                                                                The Magazine of the Department of Chemistry  Periodic
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